现在是:
 

张亮生


  发布时间: 2016-01-11  信息员:  

F:\我的照片\来自:iPhone\2012-12-15 111744_看图王.jpgProf. Dr. Liangsheng Zhang, born in Nov., 1983, joint Fujian Agriculture and Forestry University in June, 2015 as a PI and full professor. He’s honored as a Jinshan excellent young investigator and class C outstanding scholar of Fujian province.

张亮生博士,男,198311月生,20156月引进我校工作,目前为海峡联合研究院教授、PI、博士生导师、金山学者青年拔尖人才,福建省高层次境外C类引进人才。近年来以第一作者或通讯作者在Plant Journal(通讯兼第一)、Molecular Plant(通讯)、Plant Physiology(通讯)、New Phytologist(通讯和第一各一篇)等国际著名期刊发表论文11篇,影响因子总和大于60

Working experience

  • 2015/06-now: Professor & PI, Center for genomics and biotechnology, Fujian Agricultural university, 福建农林大学基因组与生物技术研究中心教授,PI

  • 2013/02–2015/06: Associate researcher (equal level to associate professor), Institute of translational medicine, college of life science, Tongji University; 同济大学转化医学研究中心,生命科学学院副研究员;

  • 2012/07–2013/02, Pennsylvania State University, Department of Biology, Postdoctoral Scholar,

    Education:

  • 2009/07–2012/07PhD student, major in genetics, school of life sciences, Fudan university (advisor: Prof. Hong Ma导师:马红教授)

  • 2007/07Summer school student in bioinformatics, Tsinghua University, 清华大学生物信息学暑期学校

  • 2006/08–2009/07Master student, Mathematics, Shanghai University上海大学数学系,理学硕士

  • 2002/09–2006/07Bachelor, Mathematics, Changjiang University长江大学数学系,理学学士

Research interests

Molecular biology and genomics focused on but not limited to horticultural plants

基于但不局限于园艺植物分子生物学和基因组学

Genomics, include de novo genome and comparative genomics

基因组学:包括从头组装基因组和比较基因组

Bioinformatics, RNA-Seq and genome data analysis

生物信息学:基因组和转录组数据分析

Molecular Evolution, Such as gene family evolution and functional divergence of duplicates

分子进化:基因家族分析和基因功能分化

Large scale discovery important gene and trait genes

基因功能和性状基因挖掘

Publications

*corresponding author#co-first author

2016

  1. Han Y, Li X, Cheng L, Liu Y, Wang H, Ke D, Yuan H, Zhang L* and Wang L* Genome-Wide Analysis of Soybean JmjC Domain-Containing Proteins Suggests Evolutionary Conservation Following Whole-Genome Duplication.Frontiers in Plant Science, 2016, 7:1800.(农大)

  2. Zhang J, Tian Y, Yan L, Zhang G, Wang X, Zeng Y, Zhang J, Ma X, Tan Y, Long N, Wang Y, Ma Y, He Y, Xue Y, Hao S, Yang S, Wang W, Zhang L*, Dong Y*, Chen W*, Sheng J*. Genome of plant maca (Lepidium meyenii) illuminates genomic basis for high altitude adaptation in the central Andes.Molecular Plant.2016, 9(7):1066-77(IF:7.14)(农大)

  3. Zhang L#*, Fei Chen#, GQ Zhang, YQ Zhang, ZG Lin, ZM Cheng*, ZJ Liu*. Origin and mechanism of crassulacean acid metabolism in orchids as implied by comparative transcriptomics and genomics of the carbon fixation pathway. Plant Journal.2016, 86(2):175-85.IF:5.96)(农大)

  4. Deng H#, Zhang L#, Zhang G, Zheng B, Liu Z, Wang Y, Evolutionary history of PEPC genes in green plants: Implications for the evolution of CAM in orchids, Molecular Phylogenetics and Evolution. 2016, 94(Pt B):559-64 (IF=3.91).

  5. Zhang GQ, …….Zhang L, ……., Liu ZJ. The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution.Scientific Reports. 2016, 12;6:19029. (IF=5.58).(农大)

  6. Zhong Z, Norvienyeku J, Chen M, Bao J, Lin L, Chen L, Lin Y, Wu X, Cai Z, Zhang Q, Lin X, Hong Y, Huang J, Xu L, Zhang H, Chen L, Tang W, Zheng H, Chen X, Wang Y, Lian B, Zhang L, Tang H, Lu G, Ebbole DJ, Wang B, Wang Z. Directional Selection from Host Plants Is a Major Force Driving Host Specificity in Magnaporthe Species.Scientific Reports. 2016, 6;6:25591(IF=5.58).(农大)

    2015

  7. Tang H, Bomhoff MD, Briones E, Zhang L, Schnable JC, Lyons E5. SynFind: Compiling Syntenic Regions across Any Set of Genomes on Demand. Genome Biology and Evolution.2015, 7(12):3286–3298. (IF=4.23). (农大)

  8. Niu B, Wang L, Zhang L, Ren D, Ren R, Copenhaver GP, Ma H, Wang Y. Arabidopsis Cell Division Cycle 20.1 Is Required for Normal Meiotic Spindle Assembly and Chromosome Segregation. Plant Cell. 2015, 27(12):3367-82. (IF=9.34). (农大)

  9. Qian S, Wang Y, Ma H*, Zhang L*. Expansion and functional divergence of JmjC-containing histone demethylases: significance of duplications in ancestral angiosperms and vertebrates. Plant Physiology2015,168: 1321-1337(5 IF:8.04)

  10. Li Q, Zhang N, Zhang L*, Ma H*: Differential evolution of members of the rhomboid gene family with conservative and divergent patterns. New Phytologist2015, 206: 368-380 (IF=7.67).

  1. Zhang L, Wang L, Cui J, Cheng F, Wang YX, Ma H: Analysis of Arabidopsis floral transcriptome: detection of new florally expressed genes and expansion of Brassicaceae-specific gene families. Frontiers in Plant Science,2015, 5: 802, (IF=4.45).

2012~2014

  1. Zhang L, Ma H: Complex evolutionary history and diverse domain organization of SET domain proteins suggestion divergent regulatory interactions. New Phytologist 2012, 195:248-263. (IF=7.67)

  1. Zhang L, Zhang Z, Weng Z, Shi W: Substitution Rates of the Internal Genes in the Novel Avian H7N9 Influenza Virus. Clinical Infectious Diseases,2013, 57(8):1213-1215, . (IF:8.89)

  2. Zhang L*, Zhang Z, Weng Z: Rapid Reassortment of Internal Genes in Avian Influenza A(H7N9) Virus. Clinical Infectious Diseases, 2013, 57(7):1059-1061.(IF:8.89,引用>18)

  3. Lei L, Zhou S, Ma H*, Zhang L*: Expansion and Diversification of SET Domain Gene Family following Whole-Genome Duplications in Populus. BMC Evolutionary Biology2012, 12:51. (IF=3.41)

  4. Dong X, Wang X, Zhang L, Yang Z, Xin X, Wu S, Sun C, Liu J, Yang J, Luo X: Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice. Plant Biotechnology Journal 2013, 11(9):1044-1057.(IF:5.75)

研究成果

主要从事植物基因组和生物信息学的研究。研究材料以园艺植物为主,如蝴蝶兰,石斛和睡莲等植物,已经有多篇研究工作发表。在园艺植物比较基因组学和生物信息学方面取得了大量的研究成果。

1)完成兰科CAM途径调控的分子机制和起源研究

申请人目前对于CAM的相关研究已取得一些前期研究成果,论文发表在The Plant Journal (第一并通讯)Molecular Phylogenetics and EvolutionScientific Reports

2植物基因组与花发育转录组及基因家族进化研究

参与了Maca和石斛基因组研究工作,花发育相关基因家族和转录组研究等。相关论文发表在Molecular PlantScientific ReportsNew Phytologist(共同通讯)和Frontiers in Plant Science上(一作)。

3植物表观遗传相关基因家族进化研究

对一些在植物发育和进化过程中重要的基因家族进行了深入研究,不仅澄清了这些基因家族的进化历史,而且揭示了重复基因对不同的基因及基因家族或亚家族截然不同的贡献。结果发表在New Phytologist(第一),Plant Physiology(最后通讯)和BMC Evolutionary Biology(最后通讯)上。

4睡莲基因组研究

园艺植物基因组被测序的并不多,只有梅花等基因组被测序。本人主持完成了睡莲基因组测序工作。使用单分子测序技(PacBio>110X)完成了睡莲基因组(409M)测序工作,Contig N50 达到2.1M45条序列长度就能覆盖基因组一半,初步组装和注释结果很好。

电子邮箱:zls@tongji.edu.cn