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林学中心论文

2019

Huiyuan Wang†, Huihui Wang†, Hangxiao Zhang†, Sheng Liu, Yongsheng Wang, Yubang Gao, Feihu Xi, Liangzhen Zhao, Bo Liu, Anireddy S. N. Reddy, Chentao Lin, Lianfeng Gu*(2019).The interplay between microRNA and alternative splicing of linear and circular RNAs in eleven plant species.Bioinformatics,doi: 10.1093/bioinformatics/btz038

Liangzhen Zhao, Hangxiao Zhang, Markus V. Kohnen, asavajhala V. S. K. Prasad, Lianfeng Gu* , Anireddy S. N. Reddy*(2019).Analysis of Transcriptome and Epitranscriptome in Plants Using PacBio Iso-Seq andNanopore-Based Direct RNA Sequencing. Frontiers in Genetics,10:253. doi: 10.3389/fgene.2019.00253

Yongsheng Wang†, Yubang Gao†, Hangxiao Zhang†, Huihui Wang, Xuqing Liu, Xi Xu, Zeyu Zhang, Markus V. Kohnen, Kaiqiang Hu, Huiyuan Wang, Feihu Xi, Liangzhen Zhao,  hentao Lin, Lianfeng Gu *(2019).Genome-wide profiling of circular RNAs in the rapidly growing shoots of moso bamboo (Phyllostachys edulis). Plant and Cell Physiology, https://doi.org/10.1093/pcp/pcz043

Yanqiu Yang†, Binqinq Chen†, Xie Dang†, Lilan Zhu, Jinqiu Rao, Huibo Ren, Chentao Lin, Yuan Qin, Deshu Lin*(2019).Arabidopsis IPGA1 is a microtubule-associated protein essential for cell expansion during petal morphogenesis.Journal of Experimental Botany,doi:10.1093/jxb/erz284

Yanqiu Yang, Weihong Huang, Endian Wu, Chentao Lin, Binqing Chen*,Deshu Lin*(2019).Cortical Microtubule Organization during Petal Morphogenesis in Arabidopsis.International Journal of Molecular Sciences,doi:10.3390/ijms20194913

ZhaoheYang, LeiChen, MarkusV. Kohnen, BeiXiong, Xi Zhen, Jiakai Liao, YoshitoOka, QiangZhu, LianfengGu, Chentao Lin*, Bobin Liu*(2019).Identification and Characterization of the PEBP Family Genes in Moso Bamboo (Phyllostachys heterocycla).scientific reports,https://doi.org/10.1038/s41598-019-51278-7

Xiaolan Yu, Yongsheng Wang, Markus V. Kohnen, Mingxin Piao, Min Tu, Yubang Gao, Chentao Lin, Zecheng Zuo*, Lianfeng Gu*(2019).Large Scale Profiling of Protein Isoforms Using Label-Free Quantitative Proteomics Revealed the Regulation of Nonsense-Mediated Decay in Moso Bamboo (Phyllostachys edulis).cells,doi:10.3390/cells8070744

Taotao Wang†, Qinzhen Li†, Shuaitong Lou, Yong Yang, Lingfang Peng, Zezhong Lin, Qin Hu, Liuyin Ma*(2019).GSK3/shaggy-like kinase 1 ubiquitously regulates cell growth from Arabidopsis to Moso bamboo (Phyllostachys edulis).Plant Science,https://doi.org/10.1016/j.plantsci.2019.03.015

Qin Wang, Chentao Lin*(2019).Photoreceptor signaling: when COP1 meets VPs.The EMBO Journal,10.15252/embj.2019102962

Yuhong Li,Bairong Lin,Tengfei Zhu,Huafeng Zhang,Jun Su*(2019).The interactions of PhSPL17 and PhJAZ1 mediate the on- and off-year moso bamboo (Phyllostachys heterocycla) resistance to the Pantana phyllostachysae larval feeding.Pest Management Science,https://doi.org/10.1002/ps.5681

张艺,高林,鲁浩月,蒋乐俏,王琳,王琴,柳青.植物光调蛋白激酶PPKs作用机制的研究进展[J/OL].分子植物育种:1-10[2020-01-02].http://kns.cnki.net/kcms/detail/46.1068.S.20190529.0922.004.html.

刘旭庆,高宇帮,赵良真,蔡宇晨,王汇源,苗苗,顾连峰,张航晓.环状RNA的产生、研究方法及功能[J].遗传,2019,41(06):469-485.

2018

Liang Yang†, Weiliang Mo†,Xiaolan Yu†, Nan Yao, Zeng Zhou, Xiaolu Fan, Li Zhang, Mingxin Piao,Shiming Li, Dehong Yang, Chentao Lin, Zecheng Zuo*(2018).Reconstituting Arabidopsis CRY2 Signaling Pathway in Mammalian Cells Reveals Regulation of Transcription by Direct Binding of CRY2 to DNA.Cell Reports,24:585-593.

Bobin Liu†, Jin Zhang†, Zhaohe Yang, Akihiro Matsui, Motoaki Seki, Shubin Li, Xinyang Yan, Markus V. Kohnen, Lianfeng Gu, Kalika Prasad, Gerald A. Tuskan, Mengzhu Lu*, Yoshito Oka*(2018).PtWOX11 acts as master regulator conducting the expression of key transcription factors to induce de novo shoot organogenesis in poplar.Plant Molecular Biology,https://doi.org/10.1007/s11103-018-0786-x

Xie Dang, Peihang Yu, Yajun Li, Yanqiu Yang, Yu Zhang, Huibo Ren, Binqinq Chen, Deshu Lin*(2018).Reactive oxygen species mediate conical cell shaping in Arabidopsis thaliana petals.PLoS Genetics,14(10): e1007705.

Hangxiao Zhang†, Huihui Wang†, Qiang Zhu†, Yubang Gao, Huiyuan Wang, Liangzhen Zhao,Yongsheng Wang, Feihu Xi, Wenfei Wang, Yanqiu Yang, Chentao Lin, Lianfeng Gu*(2018).Transcriptome characterization of moso bamboo (Phyllostachys edulis) seedlings in response to exogenous gibberellin applications.BMC Plant Biology,18:125.

Qin Wang*, Zecheng Zuo, Xu Wang, Qing Liu, Lianfeng Gu,Yoshito Oka, Chentao Lin(2018).Beyond the photocycle-how cryptochromes regulate photoresponses in plants?.Current Opinion in Plant Biology,45:120-126.

李雅君,刘孟红,林德书.转录因子JAGGED调控拟南芥花瓣的形态建成[J].分子植物育种,2018,16(12):3894-3898.

余佩杭,刘孟红,林德书.花瓣锥形细胞形态建成的机制研究[J].分子植物育种,2018,16(12):3899-3906.

林子炜,林辰涛,刘坤祥.钙离子参与硝酸盐信号网络[J].分子植物育种,2018,16(09):3016-3023.

李仕铭,周增,涂敏,叶肖肖,林辰涛,左泽乘.拟南芥隐花色素CRY光信号通路的研究进展[J].分子植物育种,2018,16(13):4444-4452.

祝巧鸣,娄帅通,杨勇,王涛涛,陈思琪,彭灵芳,张晶,魏唯,金松松,马留银,李琴珍.毛竹茎秆快速生长相关基因PeHSD1的功能探究[J/OL].分子植物育种:1-11[2018-09-27].http://kns.cnki.net/kcms/detail/46.1068.S.20180427.1052.002.html.

陈思琪,王涛涛,李琴珍,杨勇,魏唯,娄帅通,彭灵芳,金松松,周梦岩,马留银.互花米草NAC48转录因子的克隆与功能鉴定[J/OL].分子植物育种:1-9[2018-10-30].http://kns.cnki.net/kcms/detail/46.1068.S.20181019.1148.009.html. 


2017

Qing Liu,Qin Wang,Weixian Deng,Xu Wang,Mingxin Piao,Dawei Cai,Yaxing Li,William D. Barshop,Xiaolan Yu,Tingting Zhou,Bin Liu,Yoshito Oka,James Wohlschlegel,Zecheng Zuo*,Chentao Lin*.(2017).Molecular basis for blue light-dependent phosphorylation of Arabidopsis cryptochrome 2.Nature Communications,8(15234.

Yubang Gao, Huiyuan Wang, Hangxiao Zhang, Yongsheng Wang,Jinfeng Chen,Lianfeng Gu*(2017).PRAPI: post-transcriptional regulation analysis pipeline for Iso-Seq.Bioinformatics,doi: 10.1093/bioinformatics/btx830

Taotao Wang†, Huiyuan Wang†, Dawei Cai†, Yubang Gao, Hangxiao Zhang, Yongsheng Wang, Chentao Lin, Liuyin Ma*, Lianfeng Gu*(2017). Comprehensive profiling of rhizome-associated alternative splicing and alternative polyadenylation in moso bamboo (Phyllostachys edulis). The Plant Journal, DOI: 10.1111/tpj.1359. 

Zhaohe Yang†, Bobin Liu†, Jun Su, Jiakai Liao, Chentao Lin, Yoshito Oka* (2017).Cryptochromes Orchestrate Transcription Regulation of Diverse Blue Light Responses in Plants.Photochemistry and Photobiology,93:112–127.

Jun Su†, Bobin Liu†, Jiakai Liao†, Zhaohe Yang , Chentao Lin ,Yoshito Oka *(2017).Coordination of Cryptochrome and Phytochrome Signals in the Regulation of Plant Light Responses.Agronomy ,7(1):25.

Shanwen Ye†, Changyang Cai†, Huibo Ren, Wenjia Wang, Mengqi Xiang, Xiaoshan Tang,Caiping Zhu, Tengfei Yin, Li Zhang , Qiang Zhu*(2017).An Efficient Plant Regeneration and Transformation System of Ma Bamboo (Dendrocalamus latiflorus Munro) Started from Young Shoot as Explant.Frontiers in Plant Science,https://doi.org/10.3389/fpls.2017.01298

Huibo Ren†, Xie Dang†, Xianzhi Cai, Peihang Yu, Yajun Li, Shanshan Zhang,Menghong Liu, Binqing Chen, Deshu Lin*(2017).Spatio-temporal orientation of microtubules controls conical cell shape in Arabidopsis thaliana petals.PLoS Genetics,https://doi.org/10.1371/journal.pgen.1006851

Wenjia Wang†, Lianfeng Gu†, Shanwen Ye, Hangxiao Zhang, Changyang Cai, Mengqi Xiang, Yubang Gao,Qin Wang, Chentao Lin, Qiang Zhu*(2017).Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla),BMC genomics, 18. 


2016

Israel Ausin, Suhua Feng, Chaowei Yu, Wanlu Liu, Hsuan Yu Kuo, Elise L. Jacobsen, Jixian Zhai, Javier Gallego-Bartolome, Lin Wang, Ulrika Egertsdotter, Nathaniel R. Street, Steven E. Jacobsen*, Haifeng Wang*(2016).DNA methylome of the 20-gigabase Norway spruce genome.PNAS,doi:10.1073/pnas.1618019113

Qin Wang*, Zecheng Zuo*, Xu Wang*, Lianfeng Gu, Takeshi Yoshizumi,Zhaohe Yang, Liang Yang, Qing Liu,Wei Liu,Yun-Jeong Han, Jeong-Il Kim,Bin Liu, James A. Wohlschlegel, Minami Matsui, Yoshito Oka,† Chentao Lin†(2016). Photoactivation and inactivation of Arabidopsis cryptochrome 2. Science, 354(6310):343-347.

Juthamas Chaiwanon, Wenfei Wang,Jia-Ying Zhu, Eunkyoo Oh, Zhi-Yong Wang* (2016). Information Integration and Communication in Plant Growth Regulation. Cell , 164 (6): 1257-1268 .

Huibo Ren, Xie Dang, Yanqiu Yang, Dingquan Huang, Mengting Liu,Xiaowei Gao, Deshu Lin* (2016). SPIKE1 activates ROP GTPase to modulate petal anisotropic growth in Arabidopsis. Plant Physiology,

Qiang Zhu*,Eva Benková* (2016). Seedlings' Strategy to Overcome a Soil Barrier. Trends in plant science,http://dx.doi.org/10.1016/j.tplants.2016.08.003

Hangxiao Zhang,Chentao Lin,Lianfeng Gu* (2016). Light Regulation of Alternative Pre-mRNA Splicing in Plants. photochemistry and photobiology, DOI: 10.1111/php.12680

Bobin Liu ,Zhaohe Yang, Adam Gomez,Bin Liu, Chentao Lin,Yoshito Oka* (2016). Signaling mechanisms of plant cryptochromes in Arabidopsis thaliana. Journal of Plant Research, 129: 137–148.DOI 10.1007/s10265-015-0782-z

李晨曦,陈磊,江涛,杨兆河,黄志明,苏军,刘伯斌.毛竹WUSCHEL-related homeobox(WOX)基因家族鉴定及表达分析[J].分子植物育种,2016,14(08):2003-2011.


2015

Qin Wang, Mingdi Bian, Ajay Vashish, Xuhong Yu, Bin Liu, XuanmingLiu, Xiaoying Zhao, James Wohlschlege, Chentao Lin* (2015). The blue light-dependent phosphorylation determines the photosensitivity of Arabidopsis CRY2. Mol Plant, 8(4): 631–643.

Xuehua Zhong.*, Christopher J. Hale., Minh Nguyen., Israel Ausin., Martin Groth., Jonathan Hetzela., Ajay A. Vashisht., Ian R. Henderson., James A. Wohlschlegel and Steven E. Jacobsen* (2015). DOMAINS REARRANGED METHYLTRANSFERASE3 controls DNA methylation and regulates RNA polymerase V transcript abundance in Arabidopsis. PNAS, 112(3):911–916.

Jie Gao, Xu Wang, Meng Zhang, Mingdi Bian, Weixian Deng, Zecheng Zuo, Zhenming Yang*, Dongping Zhong*, and Chentao Lin* (2015). Trp triad-dependent rapid photoreduction is not requiredfor the function of Arabidopsis CRY1. PNAS, 112(29): 9135-9140.

Jixian Zhai, Sylvain Bischof, Haifeng Wang, ..., Blake C. Meyers, Israel Ausin*, Steven E. Jacobsen* (2015). A One Precursor One siRNA Model for Pol IV Dependent siRNA Biogenesis. Cell, 163(2): 445–455.

Haifeng Wang, Getu Beyene, Jixian Zhai, Suhua Feng, Noah Fahlgren, Nigel J. Taylor, Rebecca Bart,James C. Carrington, Steven E. Jacobsen*, and Israel Ausin* (2015). CG gene body DNA methylation changes and evolution of duplicated genes in cassava. PNAS.


2014

Wenfei Wang, Zhiyong Wang*(2014). At the Intersection of Plant Growth and Immunity. Cell HostMicrobe, 15(4): 400-402.

Wenfei Wang, Mingyi Bai, Zhiyong Wang* (2014). The brassinosteroid signaling network – a paradigm of signal integration .Curr. Opin. Plant Biol., 21: 147-153.

Martin Grotha, Hume Strouda, Suhua Fenga, Maxim V. C. Greenberga, Ajay A. Vashishtd, James A. Wohlschlegeld,Steven E. Jacobsen*, and Israel Ausine* (2014). SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation. PNAS, 111(49): 17666-17671.

Xu Wang, Qin Wang , Paula Nguyen, Chentao Lin* (2014). Cryptochrome-mediated light responses in plants. Enzymes, 35: 167–189.