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基因中心论文

2018

Juan Liu, Anupma Sharma, Marie Jamille Niewiara, Ratnesh Singh, Ray Ming, Qingyi Yu*(2018).Papain-like cysteine proteases in Carica papaya: lineage-specific gene duplication and expansion.BMC Genomics,19:26.DOI 10.1186/s12864-017-4394

Yinjia Li, Sheng Zuo, Zhiliang Zhang, Zhanjie Li, Jinlei Han, Zhaoqing Chu, Robert Hasterok, Kai Wang*(2018).Centromeric DNA characterization in the model grass Brachypodium distachon provides insights on the evolution of the genus.The Plant Journal ,doi: 10.1111/tpj.13832

Liyu Chen(2018). Small peptides, big roles—RALFs regulate pollen tube growth and burst in plant reproduction. Journal of Genetics and Genomics,45,121-123.

Jisen Zhang, Qing Zhang, Leiting Li, Haibao Tang, Qiong Zhang, Yang Chen, Jie Arro,Xingtan Zhang1, Aiqin Wang,Chenyong Miao, Ray Ming*(2018). Recent Polyploidization Events in Three Saccharum Founding Species.Plant Biotechnology Journal,doi: 10.1111/pbi.12962


2017

Hanyang Cai†, Lihua Zhao†, Lulu Wang, Man Zhang, Zhenxia Su, Yan Cheng, Heming Zhao,Yuan Qin*(2017). ERECTA signaling controls Arabidopsis inflorescence architecture through chromatin-mediated activation of PRE1 expression. New Phytologist, DOI: 10.1111/nph.14521

Piaojuan Chen, Yi Li, Lihua Zhao, Zhimin Hou, Maokai Yan, Bingyan Hu, Yanhui Liu, Syed Muhammad Azam, Ziyan Zhang, Zia ur Rahman, Liping Liu, Yuan Qin*(2017).Genome-Wide Identification and Expression Profiling of ATP-Binding Cassette (ABC) Transporter Gene Family in Pineapple (Ananas comosus (L.) Merr.) Reveal the Role of AcABCG38 in Pollen Development.Frontiers in Plant Science,doi: 10.3389/fpls.2017.021

Ching Man Wai,Jisen Zhang, Tyler C. Jones, Chifumi Nagai, Ray Ming*(2017). Cell wall metabolism and hexose allocation contribute to biomass accumulation in high yielding extreme segregants of a Saccharum interspecific F2 population.BMC Genomics,18:773.https://doi.org/10.1186/s12864-017-4158-8

Aijuan Xue, Zhen Li, Muchen Cai, Qing Zhang, Xingtan Zhang, Ray Ming, Jisen Zhang*(2017).Identification and Characterization of microRNAs from Saccharum officinarum by deep sequencing. Tropical Plant Biology,DOI: 10.1007/s12042-017-9190-y

Qing Zhang, Muchen Cai, Xiaomin Yu, Lishan Wang,Chunfang Guo, Ray Ming, Jisen Zhang*(2017). Transcriptome dynamics of Camellia sinensis in response to continuous salinity and drought stress. Tree Genetics & Genomes,13:78. DOI: 10.1007/s11295-017-1161-9

Hina Ali,Yanhui Liu,Syed Muhammad Azam,Zia ur Rahman,S. V. G. N. Priyadarshani, Weimin Li,Xinyu Huang, Bingyan Hu,Junjie Xiong,Umair Ali,Yuan Qin*(2017).Genomic survey, characterization and expression profile analysis of the SBP genes in pineapple (Ananascomosus L.).International Journal of Genomics,https://doi.org/10.1155/2017/10328

Lihua Zhao,Hanyang Cai, Zhenxia Su, Lulu Wang, Xinyu Huang, Man Zhang, Piaojuan Chen,Xiaozhuan Dai, Heming Zhao, Ravishankar Palanivelu, Xuemei Chen*, Yuan Qin*(2017).KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.PNAS,www.pnas.org/cgi/doi/10.1073/pnas.171605411

Zhenxia Su†,Lihua Zhao†,Yuanyuan Zhao,Shaofang Li,SoYoun Won,Hanyang Cai,Lulu Wang,Zhenfang Li,Piaojuan Chen,Yuan Qin*,Xuemei Chen*(2017).The THO Complex Non-Cell-Autonomously Represses Female Germline Specification through the  TAS3-ARF3  Module.Current Biology, http://dx.doi.org/10.1016/j.cub.2017.05.021

Yihong Chen, Qing Zhang, Weichang Hu, Xingtan Zhang, Liming Wang, Xiuting Hua, Qingyi Yu,Ray Ming, Jisen Zhang *(2017).Evolution and expression of the fructokinase gene family in Saccharum. BMC Genomics (2017) 18:197.DOI 10.1186/s12864-017-3535-7

Zhenxia Su, Lulu Wang,Weimin Li,Lihua Zhao,Xinyu Huang,Syed Muhammad Azam,Yuan Qin*(2017).Genome-Wide Identification of Auxin Response Factor (ARF)Genes Family and its Tissue-Specific Prominent Expression in Pineapple (Ananas comosus).Tropical Plant Biology,DOI 10.1007/s12042-017-9187-6

Ching Man Wai†,Robert VanBuren†,Jisen Zhang, Lixian Huang,Wenjing Miao,Patrick P. Edger,Won C. Yim,Henry D. Priest, Blake C. Meyers,Todd Mockler,J. Andrew C. Smith,John C. Cushman,Ray Ming*(2017).Temporal and spatial transcriptomic and microRNA dynamics of CAM photosynthesis in pineapple.the Plant Journal, DOI: 10.1111/tpj.13630

Liming Wang, Yuexia Zheng, Shihui Ding, Qing Zhang, Youqiang Chen, Jisen Zhang*(2017).Molecular cloning, structure, phylogeny and expression analysis of the invertase gene family in sugarcane.BMC Plant Biology, DOI: 10.1186/s12870-017-1052-0

Haibao Tang(2017).Disentangling a polyploid genome.Nature Plants,

Xiaozhuan Dai†, Youhuang Bai†, Lihmeua Zhao†, Xianying Dou†, Yanhui Liu, LuluWang, Yi Li, Weimin Li, Yanan Hui, Xinyu Huang, Zonghua Wang*, Yuan Qin*(2017).H2A.Z represses gene expression by modulating promoter nucleosome structure and enhancer histone modifications in Arabidopsis.MolecularPlant,http://www.cell.com/molecular-plant/abstract/S1674-2052(17)30270-8

Fei Chen, Xing Liu, Cuiwei Yu, Yuchu Chen, Haibao Tang, Liangsheng Zhang*(2017).Water lilies as emerging models for Darwin’s abominable mystery.Horticulture Research,4:17051.

Chen F, Zhang X,Liu X,Zhang L*(2017). Evolutionary Analysis of MIKCc-Type MADS-Box Genes in Gymnosperms and Angiosperms.Frontiers in Plant Science,8:895. doi: 10.3389/fpls.2017.00895. 

Wenpan Zhang, Sheng Zuo, Zhanjie Li, Zhuang Meng, Jinlei Han, Junqi Song,Yong-Bao Pan, Kai Wang*(2017). Isolation and characterization of centromeric repetitive DNA sequences in Saccharum spontaneum. Scientific Reports, 7, 41659.  

Zhenyang Liao, Qingyi Yu, Ray Ming*(2017). Development of male specific markers and identification of sex reversal mutants in papaya. Euphytica. 213:53

王路路, 秦源*(2017). 植物雌配子体发育的分子调控. 生命科学,29(3):310-318. (核心期刊CSCD-C)

  

2016
Robert VanBuren†, Ching Man Wai†, Jisen Zhang, Jennifer Han, Jie Arro, Zhicong Lin, Zhenyang Liao,Qingyi Yu, Ming-Li Wang, Francis Zee, Richard C. Moore, Deborah Charlesworth, Ray Ming*(2016).Extremely low nucleotide diversity in the X-linked region of papaya caused by a strong selective sweep.Genome Biology,17:230.DOI10.1186/s13059-016-1095-9

Liangsheng Zhang*, Fei Chen, Guo-Qiang Zhang, Yong-Qiang Zhang, Shance Ni, Jin-Song Xiong, Zhenguo Lin, Zong-Ming (Max) Cheng*, Zhong-Jian Liu* (2016). Origin and mechanism of crassulacean acid metabolism in orchids as implied by comparative transcriptomics and genomics of the carbon fixation pathway. The Plant Journal, DOI: 10.1111/tpj.13159

Qing Zhang, Weichang Hu, Fan Zhu, Liming Wang, Qingyi Yu3, Ray Ming, Jisen Zhang*(2016).Structure, phylogeny, allelic haplotypes and expression of sucrose transporter gene families in Saccharum.BMC Genomics,17:88.DOI: 10.1186/s12864-016-2419-6

Jisen Zhang, Anupma Sharma, Qingyi Yu, Jianping Wang, Leiting Li, Lin Zhu, Xingtan Zhang,Youqiang Chen, Ray Ming*(2016).Comparative structural analysis of Bru1 region homeologs in Saccharum spontaneum and S. officinarum.BMC Genomics,17:466.DOI 10.1186/s12864-016-2817-9

Jingping Fang, Aiting Lin, Weijing Qiu, Hanyang Cai, Muhammad Umar, Rukai Chen, Ray Ming* (2016). Transcriptome Profiling Revealed Stress-Induced and Disease Resistance Genes Up-Regulated in PRSV Resistant Transgenic Papaya. Frontiers in Plant Science,7(855). doi: 10.3389/fpls.2016.00855

Jinlei Han,Rick E Masonbrink,Wenbo Shan,Fengqin Song,Jisen Zhang,Weichang Yu,Kunbo Wang,Yufeng Wu,Haibao Tang,Jonathan F Wendel,Kai Wang* (2016). Rapidproliferationand nucleolar organizer targeting centromeric retrotransposonsin cotton. Plant Journal, doi: 10.1111/tpj.13309

Ray Ming, Ching Man Wai, Romain Guyot (2016). Pineapple Genome: A Reference for Monocots and CAM Photosynthesis. Trends in Genetics,http://dx.doi.org/10.1016/j.tig.2016.08.008

Hai Lin,Zhenyang Liao,Lingmao Zhang, Qingyi Yu*(2016).Transcriptome analysis of the male-to-hermaphrodite sex reversal induced by low temperature in papaya. Tree Genetics & Genomes, 12 (94):DOI 10.1007/s11295-016-1055-2

Xiaodan Zhang,Pingping Liang,Ray Ming* (2016).Genome-Wide Identification and Characterization of Nucleotide-Binding Site (NBS) Resistance Genes in Pineapple. Tropical Plant Biology, 9: 187-199. DOI 10.1007/s12042-016-9178-z

Wenbo Shan,Yanqin Jiang,Jinlei Han, Kai Wang *(2016). Comprehensive cytological characterization of the Gossypium hirsutum genome based on the development of a set of chromosome cytological markers. The Crop Journal, 4(4): 256–265. http://dx.doi.org/10.1016/j.cj.2016.04.001

Jingping Fang, Aiting Lin ,Weijing Qiu, Hanyang Cai , Muhammad Umar,Rukai Chen, Ray Ming,*(2016). Genome-wide comparative analysis of microsatellites in pineapple. Tropical Plant Biology, 9: 117-135.

Jingping Fang, Andrew Wood, Rukai Chen, Ray Ming*(2016). Molecular basis of off-type microsatellite markers in papaya. Euphytica, 209(2):323-339. DOI: 10.1007/s10681-015-1630-x

韩金磊,吴为人,王凯.染色体构象及其研究方法—3C技术[J].分子植物育种,2016,14(12):3501-3510.

张清,胡伟长,张积森.植物蔗糖转运蛋白研究进展[J].热带作物学报,2016,37(01):193-202.

  

2015

Huibo Ren, Deshu Lin* (2015). ROP GTPase Regulation of Auxin Transport in Arabidopsis. Molecular Plant, 8(2):193-195.

Deshu Lin*, Huibo Ren ,Ying Fu (2015). ROP GTPase-mediated auxin signaling regulates pavement cell  interdigitation in Arabidopsis thaliana. Journal of Integrative Plant Biology,  57(1):31-39.

Robert VanBuren, Fanchang Zeng, Cuixia Chen, Jisen Zhang, Ching Man  Wai,Jennifer Han, Rishi Aryal, Andrea R. Gschwend, Jianping Wang,Jong-Kuk Na,  Lixian Huang, Lingmao Zhang, Wenjing Miao, Jiqing Gou,Jie Arro, Romain Guyot,  Richard C. Moore,Ming-Li Wang, Francis Zee,Deborah Charlesworth, Paul H. Moore,  Qingyi Yu, Ray Ming* (2015). Origin and domestication of papaya  Yh chromosome. Genome Research, 25(4):524-533.

Ray Ming*, Ching Man Wai (2015).  Assembling allopolyploidgenomes:no longer formidable. Genome Biology,  16(1):27.

Haibao Tang*, Xingtan Zhang, Chenyong Miao, Jisen Zhang, Ray Ming,  James C Schnable,Patrick S Schnable, Eric Lyons, Jianguo Lu (2015). ALLMAPS:  robust scaffold ordering based on multiple maps. Genome Biology, 16(1):  3.

Haibao Tang*, Eric Lyons, Christopher D Town (2015). Optical mapping in plant comparative genomics. Gigascience, 4:  3.

Yuan Qin, Ramin Yadegari, Ravishankar Palanivelu (2015).  ACTIN-RELATED PROTEIN 6 regulates DISRUPTED MEIOTIC cDNA 1 gene expression in  ovules. Molecular Reproduction and Development, 82(7-8):  499.

Yuan Qin, Juan Dong* (2015). Focusing on the focus: what else beyond  the master switches for polar cell growth. Molecular Plant, 8(4):  582-594.

Ray Ming*, Robert VanBuren, Ching Man Wai, Haibao Tang, Michael C  Schatz,John E Bowers, Eric Lyons, Ming-Li Wang, Jung Chen, Eric Biggers, Jisen  Zhang, Lixian Huang,Lingmao Zhang, Wenjing Miao, Jian Zhang, Zhangyao Ye,  Chenyong Miao, Zhicong Lin,Hao Wang, Hongye Zhou, Won C Yim, Henry D Priest,  Chunfang Zheng, Margaret Woodhouse,Patrick P Edger, Romain Guyot, Hao-Bo Guo,  Hong Guo, Guangyong Zheng, Ratnesh Singh,Anupma Sharma, Xiangjia Min, Yun Zheng,  Hayan Lee, James Gurtowski, Fritz J Sedlazeck,Alex Harkess, Michael R McKain,  Zhenyang Liao, Jingping Fang, Juan Liu, Xiaodan Zhang,Qing Zhang, Weichang Hu,  Yuan Qin, Kai Wang, Li-Yu Chen, Neil Shirley, Yann-Rong Lin,Li-Yu Liu, Alvaro G  Hernandez, Chris L Wright, Vincent Bulone, Gerald A Tuskan, Katy Heath,Francis  Zee, Paul H Moore, Ramanjulu Sunkar, James H Leebens-Mack, Todd Mockler,Jeffrey  L Bennetzen, Michael Freeling, David Sankoff, Andrew H Paterson, Xinguang  Zhu,Xiaohan Yang, J Andrew C Smith, John C Cushman, Robert E Paull*, Qingyi Yu*  (2015). The pineapple genome and the evolution of CAM photosynthesis.  Nature Genetics. doi:10.1038/ng.3435

Jinlei Han,Baoliang Zhou,Wenbo Shan,Liying Yu,Weiren Wu,Kai Wang* (2015). A and D genomes spatial separation at somatic metaphase in tetraploid  cotton: evidence for genomic disposition in a polyploid plant. Plant  Journal. DOI: 10.1111/tpj.13074

Haibao Tang , Matthew D. Bomhoff, Evan Briones, Liangsheng Zhang,  James C. Schnable, Eric Lyons* (2015). SynFind: compiling syntenic regions  across any set of genomes on demand. Genome Biology and Evolution.  doi: 10.1093/gbe/evv219

2014

Haibao Tang*, Eric Lyons, James C. Schnable(2014). Early History of  the Angiosperms. Advances in Botanical Research,  69:195-222.

Jisen Zhang, Adnane Boualem, Abdelhafid Bendahmane*,Ray Ming*(2014).  Genomics of sex determination. Current Opinionin Plant  Biology,18:110-116.

Jisen Zhang, Juan Liu, Ray Ming* (2014). Genomic analyses of the CAM  plant pineapple. Journal of Experimental Botany, 65(13):  3395-3404.

Lihua Zhao, Jiangman He, Hanyang Cai, Haiyan Lin, Renyi Liu, Zhenbiao  Yang, Yuan Qin* (2014). Comparative expression profiling reveals novel gene  functions in female meiosis and gametophyte development in Arabidopsis. Plant Journal, 80 (4): 615-628.

2013

Jianping Wang*, Spurthi Nayak, Karen Koch, Ray Ming(2013). Carbon  partitioning in sugarcane (Saccharum species). Frontiers in Plant Science, 4: 201.